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API key and permission correct?(2)zODOI neither found in Scopus nor in Crossref. Please do check if DOI is correct.ritemrovolumetyperrrpageissueshort-container-titlezcontainer-titlecreated date-partsXXXX)doiapprovedrtro author_listpub_dater open_accessabstractr journal_shortjournalpub_type chair_pubzInformation taken from Scopus.z Information taken from Crossref.z+Information taken from Scopus and Crossref.z No DOI found.zpublication already therezpDOI already in publication list. If you want to add it again, please delete the corresponding publication first.)r. rE)/rKrBrrrrSrrrrprstriprorwfind_doi_for_titlerur|rrr3rLcountrrr get_abstracthtmlunescaperformat_authors_scopusrsourcetitle_abbreviationpublicationName pageRanger startingPage coverDateopenaccessFlagformat_authors_crossrefpub_date_crossradded doi_in_pubsall given_name last_name publicationadd)r6rBrrrSr7kakar8rnumroauthorsrrrtrrtypeenumberrrworksitem_CR item_scopusrr\iddir[pis r>add_publication_infors<<<<<<<<&&&&&&Q&Q&'+++77"&kk## $;;#))sV||x4z"""(29==$;;"'#,,;":EMJJLLLDD #EIJJLLL!((s(;;AACCklgw$ T%Q^`g !88e  ))C.. s6777 #/tDDD  #cVWWW" $;$#6#6o  ),w *L*LMM$&& M+*;<'>H*2..*=*=a*@'u'u8>>RUCVCVWYCZ'u'u]e]k]klo]p]pqr]s'u'uHH,'+HHHt||!#*6?DD! D~~!%,W%5FF! D$,,!,34K,LQ,OMM! D$!&-.?&@&CGG! Dt||!#&wy'9,'G'J1'M#N#NDD! D!D(($+M$,,(. !kceDPUcj-5fR]-5DP]gny~.2555  d??"BEMM D(("DEMM"OEM"  4ZZ)EMEKK . / / /MEM#E EK JJLLLn  "" & &A&--%-@@GGabamnoapquauvwwBbBGDDD & & !!"%%%% & & Fs#E$$E:>FF& 2J==KKKK KK))K15K==L?MM1A$OO&O//O3=PP P##P'1QQ'Q66Q:ct|d5}|}dddn #1swxYwY|ddd}|D]}|d}i}|D]}|dd} |d d krq|d krjd |d d vr]d|d dvr2|dd |d<nd|vr3|ddd |d<nd|vr3|ddd |d<n|dd}t |dkr|dd}t |dkr(t j||d <n5|d ||d <#YxYw|ikr9 | |d} #tj |d g} YxYw| t j} | S)u* Reads publication from database given by the format of the webpage. Parameters ---------- file_name : name of the database file Structure: Two columns (1 = property, 2 = value ) Entries are separated by 'enditem ##################################' Example: '########################################################################## AG GC cvselected no firstlast yes #filename cover ../pubs/reprints/covers/2020_Krok.jpg year 2020 title Modification of titanium implants using biofunctional nanodiamonds for enhanced antimicrobial properties authors Emilia Krok, Sascha Balakin, Jonas Jung, Frank Gross, Jörg Opitz, G. Cuniberti pubdate 2020.03.02 type regular reference Nanotechnology 31, 205603 (2020) DOI 10.1088/1361-6528/ab6d9b/ abstract The present study describes a novel antimicrobial surface using anodic oxidation of titanium and biofunctional detonation nanodiamonds (ND). ND have been loaded with antibiotics (amoxicillin or ampicillin) using poly (diallyldimethylammonium chloride)(PDDA). Successful conjugation with PDDA was determined by dynamic light scattering, … enditem ########################################################################### ...' Returns ------- DataFrame Containing all publication entries from 'file_name'. Each row contains one publication and columns its values. If one property is not set in file_name, its value is set to 'np.NaN'. rNenditemrr  r#rrrr journalfullname maxsplit arxivpasswdTrlindex) r/readrrrrvnpNaNr~r|r}fillna) file_namefilerNall_publicationsarticle attributesdictioattrdfs r>read_publicationsrtsH i  ))++}}Y//"5# 5 5]]4((   C++fd++C  GsNNC!H9L9L"c!B$i//.1ii .C.CB.G.M.M.O.Oz***c1147IIcAI4N4Nr4R4X4X4Z4Z011&#--03 # 0J0J20N0T0T0V0V}-- # $ ; ;u::??$'IIcAI$>$>Eu::??79vF58>>#3#3447>#3#34  R<< 5YYvDY99 5\&444  26  B Is%266E>HH!H::Ic|d}i}|D]'}|dd} |ddkr|dkrd|ddvr|dd }t|d kr|d d }t|d kr(tj||d<nk|d||d<n5|d||d<!#Y&xYw|S) Nrrrrrrrrrr)rrrvrrr)r8rrrrs r> entry_to_dictrs.T""J Fkk&$'' B3SBYYSAaC5H5H $ 33u::??IIcAI66E5zzQ356uQx~~//00389??3D3DuQx~~//00/4Ry/@/@F58>>++,  D Ms DD;;Ec@t|d5}|}dddn #1swxYwY|d}|D]N}t|}|ikr7 ||d}0#t j|dg}YKxYwO|tj }||d |d zj j }| |d |S) NrrTrrrvornamenachname)inplace)r/rrrr~r|r}rrrrrvaluesdrop)rrrN all_entriesr8rrinds r>read_addressesr sP i  "iikkG"""""""""""""""-- **K55u%% R<< 5YYvDY99 5\&444  26  B R ]   ! !BzN$7$7$9$9 9 : @ GCGGCG Is266,BBc Xd}t|d5}||ddd|D]\}}||}|D]o\}}t |dkr,||dzt|zdzD||dzt|zdzp|| dddn #1swxYwYdS) N:enditem ################################################# rIrrrr )r/r0riterrowsritemsrvrp) rr seperatorrrrowto_writeindex_wvalues r>write_addressesrsaNI i   " 9??4?33A6777++-- " "JE3CHHJJ;'H"*.."2"2 F Fw<<??JJw~E :TACCCCJJw/#e**{})formatrr)rcolorcolorstrs r>printmdrs5066ufEEH HX  rWcd}d}d}g}|jD]t}|j|j}tj|s"t |d}tj|s|dkrwt|j|j}||j|df<tj|s8tdt |zdz|j|j|dz }tj|r| tj |j|j dkrL|j|j d kr6td |j|jd |j|j d st|}|dkr| ||dz }t|j|j}tj|s||kr!| tj td |d||dz }||j|df<t|}|dkr| ||dz }U| tj vtdt |dt |ddtd|||d<|S)NrrrDOIzFound the DOI(z) for:rpatentthesiszNo authorlist found for  ()zFound the correct DOI:z for the old one:z**z new DOIs has been found and z& incorrect DOIs have been corrected**.redrz4We also have created {} formated author list entries authors_new)rlocr r|rrprrrorwr~rrrget_authors_doirr) r N_new_doisN_corrected_dois N_authorlistr'r r author_new_dois r>correct_authors_and_doir/sJLKx 3 3fSkows|| &c((..%%C 73<< 3"99$RVC[%677C #BF3u9 73<< &S1HOPPPa 73<< 3   rv & & &vc{8++s 0@H0L0LY1BYYbfSkFVYYYZZZ%c**G$""7+++! ,RVC[->??77## 3w#~~&&rv....R7RRSRRSSS$)$(/BF3u9%-g66G$#**7333$) #**262222 |Z | |sCS?T?T | | |EJKKKK @ G G U UVVV#B} IrWc td|dd}t|jdkr|jdj}|Sn#YnxYwt ||d}|dkr|d St jS) z.Looks for the DOI in Scopus and Crossref. ztitle(r$T)verboserrN) author_searchrr ) ScopusSearchrvresultsrfind_crossref_for_titlerr)ro author_presetdocument_search doi_scopusrs r>rr)s  &'8'8'8'8$GGG & ' '1 , ,(037J  -   #5 t T T TD t||E{v s AAAcd}t}|dkr5|dkr||}nN|||}n6|dkr|||}n||||}|D]F} td|dd|}n #d}YnxYw|dkr|cSGdS) Ng) bibliographic)r:ru)r:container_title)r:rur;rorg?)rqueryr ratio)ror2rsimrw1rsim_news r>r5r5?s C GGE$ D 511BB5GGBB D 5'JJBB5X_``B %dDM!,r)r)\sI$S))) *3// / / / 444s.%.+..c|dkr#t}||}d}d|dD}t|D]\}}|t|ddz kr|dz }|ddkr|dz }|d D]}|d d kr|d d krt|d dkrF|d D]"}||d d zz }#|dddz}||d dzz }|d |dzdzz }|ddkr|dz}T|dr"||ddzz }||ddzz }|dd}|S)z For a given DOI the authors will be searched in Crossref and will be formated in the following way: 'E. Krok, S. Balakin, J. Jung, F. Gross, J. Opitz, and G. Cuniberti'' Nrcg|]}d|v| S)family).0xs r> z+format_authors_crossref..rs>>>A 1 rWrurand rErDgivenrr–.-rrr Cuniberti, , r)rr enumeraterv capitalizerupperisupper) r rrrrrpersonfirstsps r>rrhs  t||yy~~ F>>d8n>>>K{++22 6 T(^$$q( ) ) f F (  & & ( (K 7 7 bLFG_**,, 7 7EQx#~~%(U"2"2u{{3''((1,,#kk#..77"Q%++--$"66#CRC[C/FFeAhnn..55FF#uQx~~///$66 (  & & ( (K 7 7m+FFh'')) 2&*5577$>>&*T11 #2#;F MrWcT|dkrt|}d}t|jD]\}}|t|jdz kr|dz }|jdkr|dz }|jdkr|jdkr |jD]}|ddkr|dd krt|ddkrS|dD]/}|t|d d zz }0|dd d z}|t|d d zz }|dt|d zd zz }|jdkr|dz}|j r.|t|jdzz }|t|jdzz }|dd}|S)z For a given DOI the authors will be searched in Scopus and formated in the following way: 'E. Krok, S. Balakin, J. Jung, F. Gross, J. Opitz, and G. Cuniberti'' NrrrJrDrrrrLrMrrrrNrOr) rrPrrvsurnamerQrr html_codingrRrS)r rrrrTrUrVs r>rrs/ $#C(( Fw//== 6 W_%%) * * f F > $ $ & &+ 5 5 rMF   $ $):f)D)D*0022 I I8s??uQx5'8'85;;s++,,q00"'++c"2"2HHB"k"Q%++--&@&@4&GGFF!'!3+eAhnn.>.>"?"?$"FFcKa0@0@$A$AADHHFF > $ $ & &+ 5 5m+FF~%%'' =+fn&?&?&A&ABBTII+fn55<< #2#;F MrWcRtjtj|}|S)z&Converts string to HTML entities. )nenamed_entitiesrescape)rs r>rYrYs# t{622 3 3F MrWc d}iddddddddddd dd dd dd dd dddddddddddddddiddddddddddddddddddddd dd!dd"dd#dd$dd%dd&did'dd(dd)dd*dd+dd,dd-dd.dd/dd0dd1dd2dd3dd4dd5dd6dd7did8dd9dd:dd;dddd?dd@ddAddBddCddDddEddFddGddHddddddddddddI }t|dJ5}|jD]W}|D])\}}||jvrt j|j||sM|j||dKks6t|j||dLkr|d krbt j|j|dMs=| ||zt|j|dMzdNz| ||zt|j||zdNz)+| |Y dOdOdOn #1swxYwYtdP|dOS)Qz Writes the Dataframe df in the structure needed by the webpage to be imported. The database is saved in the file 'filename'. rAGrrJrr firstlastcoverrtrorpubdate referencer rfilenamenonmieiECEMPCover publisher submisdateISBNbbllxbbllybburxbburyfieldhyperrefrr journalrefarxiv arxivmeshendpage refreport_no report_no startpagerjournalacronymWCUISSNrrIF acceptdate revisedate webpubdateESFZIHpudate booktitleeditorsorder_itpubtownreference_morepISSNaddress WCUTOPTEN stampamelovjntref openaccessAG2 journalcover arxivdate commentcv addmaterial receivdateIFyearPRaccessioncode PRstatusURLIFrefplace) misurelibrarycongressseries coverdetailsreferenceshortIEEEcnINSPECan econophysicsother_order_it senzaISBNlinkrIrrr'rNzDatabase written to file ) r/rrcolumnsr|rr(rprr0rw)rrdrseprr keyspacings r>write_corrected_dbrsU OI 84 8d 8VF 8 t 8$V 8-3F 8c  8 COt  8 6 8't 8.7v 8@Nd 8 t 8) 808 8 8 8AQQU 8  8  8)0 89?v 8HLF 8  8+4 82>d 8EJ& 8  8"& 8+6d 8=Ff 8 d 8&f 8/?t 8 8 8FMV 8 V 8) 80get_pub_googlersD [\\\ %&&&**;77L ,  F [[>"2[ 3 3FJ"OO&&swT&NN %2J|6UDAAAZ077999:J$W-44U;;Jw rWctdtddgd}t||t dt |dS)NzLet's try to use a proxy...Tr)DEUSCA)randtimeout country_id)httphttpsz(**proxy is used to access Google with:**)rwrrrxrrrp)proxys r>rrss ())) 46G6G6G H H H L L N NE U%000 Cs5zz C CDDD 4rWctddtj}|jD]q}t |dj|||d|jdd}tj d r|d  d |d <td d|S) NzCFill all informations available at **Google** for the publications:bluer&rornTFrkrtrz **Finished**) rr|r}rrwr(r~rzrjtimesleepr)DF pub_filledrs r>google_details_publicationr s QY_````J X r'{q!"""&&r,'7':'?'?'A'A'E48u'GG  1 #F+22599Jv N&)))) rWrDc ggggggggf\}}}}}}}} |d} |d} |d} td|D]^\} }t|dt|d||d}|dkrQ t |dd } ||jn&#|tjYnxYwn@#t|dd zd}|tjYnxYw||d||dd |||t|| t| |j dkr||j n!||d d nP# ||d d n&#|tjYnxYwYnxYw| | dkr |j dkrt|j |j| df<n+|ddd |j| df<nQ# |ddd |j| df<n#tj|j| df<YnxYwYnxYw| | dkr t|d|j| df<nf# |jdkrtj|j| df<nt|j|j| df<n#tj|j| df<YnxYwYnxYw| | dkrz |d|j| df<nf# |jdkrtj|j| df<nt|j|j| df<n#tj|j| df<YnxYwYnxYwd|dddvsd|dddvrzt'||}|dkr||d,t)|dkr||V||ds||d|d||d|d||d|d||d|tj| tj`tj||d<tj||d<tj||d<tj||d<tj||d<tj||d<tj||d<|dt|d<tj| |d<t/|}|S)z Function that gets DOI and title from Crossref and/or Scopus and writes it into the dataframe. If volume or issue is not given by Google it will search for it at Crossref and Scopus. rrr.z%searching in crossref and scopus for:rorNr FULL)viewz8**not found in scopus**. API key and permission correct?rrTrrru…rz Full-Text new_titlerrr cover_date first_last)rrwrr5rr~rrrrrfirst_last_authorrrrpr(rrissueIdentifierrrvarrayrclean_abstracts)rrudoi_list title_list item_listrr abstract_listrrvolume_conditionnumber_conditionpages_conditionelementrrrrs r>get_details_crossref_scopusrs <>r2r2rSUWY;Y:Xz9hM:j!(+2244!(+2244 )0022O 1222"++--Q&Q&  c'l*3w<YPP d?? */VLLL .%%k&;<<<<.%%bf----- *)ccddd" !!"&))))) OOGEN + + +   gg.q1 2 2 2   W % % % OON733 4 4 4   099 ; ; ; 174??!(()MNNNN!((1H)I!)LMMM 11!((1H)I!)LMMMM1!((00000w'4// A"/477:=k>V:W:W ww77:A&/:O:OPS:T:TUV:W ww7AA:A&/:O:OPS:T:TUV:W ww77A:<& ww777(D00 B7:78;L7M7MJN78#344BB&-55?AvJN78+;<w7GJN78#344BB&6$>>?AvJN78+;<3+LL>L97L>M..O1AN21O2O  O!O44Q7AP87Q8QQcd} |ddd}|dd}|dd}|dd}t|dkr1|dkr|S|jdkr|jdkr|S|j}n |j}|S|S#|dkr|cYS|jdkr|jdkr|cYS|j}n|j}YnxYw|S) z Receives abstracts for publication from Crossref and Scopus, given the item found by Scopus and Crossref. Returns ------- String abstract Nrz rzz z r)rrv descriptionr)rrrs r>rrs H3:&..{B@@##J44##L"55##K44 x==3  d""*d22"+t33'#.#7*6H#O 3 $  OOO&$..'4//#OOO*3HH&2 Os*A8B(=B(B(&B(( C4CCc||jD]2}d}|j|j}|ddks0d|ddvs$d|ddvsd|ddvs d |dd vr|d d kr'|||d d zdzdz}n|dd kr$|||ddzdz}nV|||ddzdz}n2d|ddvr!||d|dz}n||z}||j|df<4|S)Nrrrrrrrrrrrrrrrrrrrr)rr(rr)rrrrs r>rrsx((fSk" q6T>>[C"I553rr79J9Jk]`abceae]fNfNfj{@CDGEGDG@HkHkHxx ##b((#chhz&:&:1&<&=&=">>D-((2--#chh}&=&=b&@&A&A"BB#chhsmmAo&6&6"77s455z!!#osxx~~o"66#!'s:~ IrWadd.database.papersc^g}|tjdd}d}gd}idddd d dd d d dd ddddddddd dddd dd dddddddd idd ddddddddddddd d d!d"d#d d$dd%d d&d"d'dd(d d)d d*d id+dd,d d-dd.dd/dd0dd1dd2d d3d d4d d5dd6dd7dd8d d9dd:d;ddd?dd@d dAd dBddCd dDddEd dFd dGd dHd"dId dJddKd"dLd"dMdddd"dd d dd d d d dN }t|dO5}|D]a\}} t j|dPs|dPdkr |dP} ntn:# t|dQ} n#t|dR} YnxYwYnxYwt|} t|dS} t|d} dT| dUdVvr| |dW| |dXdYdZ|d[d\d]t|d | | |d^| |d|dW| d\g} t|| D] \}}| ||zd_z!c dVdVdVn #1swxYwY|S)`a= Write publications from Google to filenname with the structure needed by the webpage of the chair. It aslo returns the urls of the articles with incomplete abstracts. 'XXX' is written in the database where no data can be found. By searching for 'XXX' later we can complete those entries by hand. XXXT)regexr)zAG z cvselected ztype z firstlast z #filename z#cover zyear ztitle z authors z pubdate z reference zDOI z hyperref z abstract rr_rrJrrr`rartrorrbrcr rrdrerfrgrhrirjrkrlrmrnrorprrrqrrrsrrtrurvrwrrxryrzrrr{r|r}r~rrrrrrz rrrrrrrrrrrrrrrrrr) rrrrrrrrrrrrIr'rrurz…iNurlGCnotypeXXXrrz../pubs/reprints/covers/XXXrr)rrnanr/rr|r ValueErrorrformat_authors_googleformat_referencerYr~r0rpr)rirdurl_abstract_incompletername_rowrrrr author_shortrcrrrNnamers r>add_pubs_to_filers$!''T'BBLNIQQQH ^4 ^ T ^6& ^ t ^$V ^-3F ^c  ^ DPQU  ^ 6 ^'t ^.;3 ^AJ& ^ $ ^!,D ^3>d ^ ^ ^EMV ^ D ^#( ^17v ^@Gv ^ & ^v ^(4D ^;Gt ^  ^$F ^-2& ^;C6 ^ t ^'v ^0:% ^BK6 ^ ^ ^ D ^#*& ^3d ^ERRU ^ ! ^ 'v! ^ 0A! ^ GTTW! ^" 6# ^ ^"$*Fc4$QW4$X\' ^ ^ ^C( h  0&//11 0 0JE3 Hws=122's=7IU7R7R#&}#5LL$,,&! HH#:3v;#G#GLLH#8X#G#GLLL(--I#C $455I"3z?33HXcdd^++'..s5z::: JJy ! ! !T9c,.?4c#f+6F6F ,J #e*c%j(BHG"(G44 0 0 U 4%<$.//// 0- 00000000000000002 #"sCJ"9=E76J"7F.:FF.F) 'F.,C)J""J&)J&c d}|dt|dzdzz } |dtt|dzdzz }n%#|dt|dzdzz }YnxYw |tt|dd ztt|d zd zz }nH#|t|d d ztt|d zd zz }YnxYw|S) Nrzrzz rz r.r#rtr$r)rYrpr)rrs r>rrs F ek#o"6777&@@F8&3s3x=11222W<<8&3s8}---77J#c#g,''((4/#c#f+6F6F2G2GG#MMJ#c(m$$t+c#c&k2B2B.C.CCcII Ms+A A04ACADcj|ddddks|ddddkrdSdS)z8 Checks if Cuniberti is either first or last author rurrErDryesrrFrs r>rr s@ Xq(# 33Xr8J88TYd7d7dutrWct|D]4\}}|dkrtj| tj|5dS)NrT)rP webbrowserr/ open_new_tab)urlsrrs r> open_urlsrsPD//))3 66 OC  #C ( ( ( ( 4rWc |ddd\}}}n6# |ddd\}}}n#tjcYcYSxYwYnxYwtt|dkrdt|z}tt|dkrdt|z}d|||S)Nzpublished-onlinerrissuedr0z {0}.{1}.{2})rrrvrpr)rrtmonthdays r>rrs 23LA!DeSS #H~l;A> D% 6MMMMM 3u::!c%jj  3s88}}CHHn   c5 1 11s#A7AA A Ac"|dkrd}d}|}|d}t|D]\}}|dd}|t|dz kr|dz}|dkr|d z}|ddd}d} |D]L} | d d kr$| d d kr| || d d zz } 2| d || dzd zz } M|| z||z}|dkr|}|dz}|dd}|S)NFc|SrBrF)rs r>rYz*format_authors_google..html_coding/sLrWrz and rrrrDzrrrLrrOr)rrPrv) aut html_encoderYrrrrrX first_names first_shortrUs r>rr-sqe   FK##G,,K[))4**S//"% [!!A% & &W_F k ! !e^Fjjoocrc*    A AEQx358u#4#4{{5844t;; s[[q%:%::TAA k)KK,@,@@F k ! !F$ CRC[F MrWc 0d}gd}gd}tdd5}|jD]}|j|ddks|j|ddkrt|D]\}}t j|j||s|j||d krB||||zt|j||zd z||ڌ dddn #1swxYwYdS) Nr)rr`rtrorr rcr)rrrrrz rr database_newrIrregularletterrr)r/rr(rPr|rr0rp)rrrNdistrr rconts r>write_corrected_database_shortrLslNI___G F F FD nc " " d8  Cvc{6"Y.."&+f2E2Q2Q(11TTGAtwrvc{4011TbfSk$6G66Q6Q 4$q'>Cs D8I4J4J#JT#QSSSS 9%%%%                 FsC#D  DDrB)F)rD)r)Bpandasr|numpyrrr4 namedentitiesr[rrIPython.displayrrosenvironpybliometrics.scopusrfp.fprcrossref.restfulrdifflibr django.template.loaderr r django.templater django.httpr r?rPrVr]rdrgrrrrrrr rrr/rr5r)rrrYrrrrrrrrrrrrrrrFrWr>rsv  -------- F 222222""""""######AAAAAAAA######$$$$$$$]$]$]L0            ,/,/,/^,[ [ [ zJJJZ&$        ***Z,:   """"J    F+ + + \6   iiiiX'''R(;#;#;#;#|    2 2 2>     rW